Macromolecules and biology
- ABC Agricultural Biotechnology
Center (Hungary), hungarian node of EMBnet
WEb site for Molecular Biology
- Antibody Resource Page
Search Launcher On-going project to organize molecular biology-related
search and analysis services available on the WWW
Repository for Data on Proteins, Peptides, and Nucleic Acids from NMR Spectroscopy
- Bioperl association of developers
of public domain Perl tools for computational molecular biology.
- Biosci BIOSCI is a set of electronic
communication forums - the bionet USENET newsgroups and parallel e-mail lists
- used by biological scientists worldwide.
- Biosci FAQ Frequently asked questions.
Online molecular biology research tools for the analysis of
nucleic acid and protein sequences, genome structure, and biomacromolecular
- CEPH Genotype database
- Collaborative BioMolecular
Tools Presents a number of collaborative projects. (CBMT).
- Cytokines Web site, UK
- Deambulum An easy
access into the jungle of biologic information from CITI2, Paris, France.
- DNA bend.it
This server predicts bendability and propensity to curvature from DNA sequences.
- ECTOC Hyperglossary.
A hyperglossary is essentially a database of terms cross-indexed to related
and derived properties and presented on-screen as a hypertext document.
Integrated information system specializing in immunoglobulins (IG), T cell
receptors (TR), major histocompatibility complex (MHC) and related proteins
of the immune system of human and other vertebrate species.
- Ion channel anonymous ftp site for ion channel-related material
- MDPI Molecular Diversity Preservation
International (MDPI), a nonprofit and an independent international organization
coordinates and provides supporting services of worldwide registration, deposit
and distribution of molecular and biomolecular samples for chemistry journals,
for chemistry and biochemistry professionals and for commercial and academic
- mmCIF Macromolecular
Crystallographic Information File
- The National Library of
- General interest databases
- EMBnet databases
- GenoBase at NIH
- Heidelberg EMBL
- Infobiogen Genome Database.
French node of EMBnet.
- INFOBIOGEN Bio E-mail server
This mail server allows you to retrieve records by keyword searching (like
the E-mail server at the NCBI), in dbEST, Genbank, Embl, Swissprot. These
searchs can be process on the release or on the updates. To receive the instructions
for use, you have just to send an E-mail to email@example.com with "datalib help"
in the body. (bank = genbank embl or dbest)
- SRS at EBI (UK)
- SRS at CSC (Finland)
- Oligo server
- PCR Information and
links on all aspects of the Polymerase Chain Reaction (PCR)
- Representation of Molecular
Models A course in english or in french from the dept of Physical
Chemistry, Geneva, Switzerland
- XPLOR Library of
X-PLOR topology and parameter files for several hundred hetero compounds
- X-PLOR resources on
- X-PLOR archive
AUTODEP AutoDep Version 1.0
is a World Wide Web-based graphical interface to the deposition form which
leads the author through the entire submission process.
Brookhaven National Lab. US information about the PDB.
CSBS Cambridge School of Biological
CARB at NIST
Cis-pro and Cis-peptides List from the PDB.
Database Links Diagram Kyoto Japan
ExPAsy Molecular Biology Server
This server is dedicated to the analysis of protein and nucleic acid sequences
as well as 2-D PAGE
EU Protein Engineering &
Structural Biology U. K. page of RTD Programmes in Europe
- GPSDB the Gene and Protein Synonym Database. The most comprehensive database of gene and protein name synonyms. This authoritative thesaurus, published by PharmaDM, has been compiled in cooperation with SIB (the publishers of Swiss-Prot and ExPASy), OFAI, the University of Manchester, and others.
databank Contains details of experimental conditions used for protein
Klotho: Biochemical Compounds
This database represents our effort to rebuild the Brookhaven PDB protein
structure database into a new format using an ASN.1 based data specification.
MMDB data files help to correct some of the inconsitencies in PDB data
MOOSE Macromolecular Structure
Query. MOOSE has its own internal database system which is synchronized
with the contents of the PDB ftp server.
SwissProt + PIR + GenBank + PDB gateway at NIH(US)
NRL -3D protein
structure Database at John Hopkins U. USA
and X-PLOR dictionaries
A service to obtain a largest non-redundant set of protein structures from
PDB according to crystallographic resolution and sequence identity
Here you can find reports describing structural problems in PDB entries
that have been determined using X-ray diffraction techniques.
Protease and protease inhibitor Web server
Protein Data Bank
(Infobiogen site in France)
Protein Data Bank
PDB files accessible by anonymous ftp (Infobiogen site in France)
Protein Data Bank(Pasteur site in France)
- PDB transition
plan from Brookhaven National laboratory (BNL) to the Research
Collaboratory for structural bioinformatics (RCSB)
select from EMBL Heidelberg. Representative list of protein data
bank chain identifiers from U. Hobohm and C. Sander
Protein Database Toulouse France
Sequence Analyzer U. of Boston. On-line program for Protein Sequence
Protein Structure Database (PSdb), is a protein database, dervived from
the information available in the Protein Databank and NRL-3D database,
that relates secondary (e.g. Helix, Sheet, Turn, Random Coil) and tertiary
information (e.g. Solvent accessibility, internal relative distances, and
ligand interactions) to the primary structure.
revisited About Ramachandran plots.
SCOP Centre for Protein
Engineering, Cambridge (UK)
Structural Classification of Proteins
of protein binding sites contains more than 200 entries
for PDB macromolecules. Need a VRML browser.
Nucleic Acid Database (NDB)
tool for restriction mapping nucleotide sequences
- SInCris Editor - Copyright ©
International Union of Crystallography